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  • User Studies
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  • Non-HIPC Studies
  • *** COVID-19 ***
  • Lung - Meta-analysis - European (PLoS Genetics, 2012) 1111 samples
  • Lung - Mixed ethnicity - GTEx Consortium v8 (bioRxiv, 2019) 515 samples
  • Whole Blood
  • Whole Blood - European American (Framingham Heart Study, NHLBI) 5257 samples
  • Whole Blood - Mixed ethnicity - GTEx Consortium v8 (bioRxiv, 2019) 670 samples
  • Whole Blood - Meta-analysis - European (Nature Genetics, 2013) 5311 samples
  • Whole Blood - European (Nature Genetics, 2017) 2166 samples
  • Whole Blood - East Asian (PLoS Genetics, 2014) 1799 samples
  • Whole Blood - East Asian (PLoS One, 2014) 298 samples
  • Whole Blood - Meta-analysis - Mixed (BioRxiv, 2018) (*10722 overlaps) 31684 samples
  • Whole Blood - Mixed ethnicity - CAGE (AJHG, 2017) 2765 samples
  • Whole Blood - Mixed ethnicity - LIFE-HEART (HMG, 2015) 2112 samples
  • Whole Blood - Mixed (Nature Genetics, 2017) 242 samples
  • Monocytes
  • Monocytes - African American (Science, 2014) 162 samples
  • Monocytes - East Asian (Science, 2014) 155 samples
  • Monocytes - European American (Science, 2014) 377 samples
  • Monocytes - Meta-analysis (Science, 2014) 696 samples
  • Monocytes - European (Nature Genetics, 2012) 288 samples
  • Monocytes - European American (Science, 2014) 432 samples
  • Monocytes - Mixed (Cell, 2018) 91 samples
  • Monocytes (non-classical) - Mixed (Cell, 2018) 91 samples
  • Monocytes - Mixed - BLUEPRINT (Cell, 2016) 194 samples
  • Monocytes - splicing QTL - Mixed - BLUEPRINT (Cell, 2016) 194 samples
  • Monocytes - European - single-cell - Lifelines Deep (Nature Genetics, 2018) 45 samples
  • Monocytes (classical) - European - single-cell - Lifelines Deep (Nature Genetics, 2018) 45 samples
  • Monocytes (non-classical) - European - single-cell - Lifelines Deep (Nature Genetics, 2018) 45 samples
  • Monocytes - European (Nature Communications, 2017) 134 samples
  • CD4+ T-cells
  • CD4+ T-cells - African American (Science, 2014) 162 samples
  • CD4+ T-cells - East Asian (Science, 2014) 155 samples
  • CD4+ T-cells - European American (Science, 2014) 377 samples
  • CD4+ T-cells - Meta-analysis (Science, 2014) 696 samples
  • CD4+ T-cells - Mixed (Cell, 2018) 91 samples
  • CD4+ naive Treg-cells - Mixed (Cell, 2018) 91 samples
  • CD4+ memory Treg-cells - Mixed (Cell, 2018) 91 samples
  • CD4+ Th1-cells - Mixed (Cell, 2018) 91 samples
  • CD4+ Th1/17-cells - Mixed (Cell, 2018) 91 samples
  • CD4+ Th17-cells - Mixed (Cell, 2018) 91 samples
  • CD4+ Th2-cells - Mixed (Cell, 2018) 91 samples
  • CD4+ memory Tfh-cells - Mixed (Cell, 2018) 91 samples
  • CD4+ T-Cells - Mixed - BLUEPRINT (Cell, 2016) 171 samples
  • CD4+ T-Cells - splicing QTL - Mixed - BLUEPRINT (Cell, 2016) 171 samples
  • CD4+ T-Cells - alternative splicing QTL - European (PLOS Genetics, 2015) 204 samples
  • CD4+ T-Cells - European - Estonian Biobank (PLOS Genetics, 2017) 313 samples
  • CD4+ T-Cells - European - single-cell - Lifelines Deep (Nature Genetics, 2018) 45 samples
  • B-cells
  • B-cells - European (Nature Genetics, 2012) 288 samples
  • B-cells - Mixed (Cell, 2018) 91 samples
  • B-cells - European - single-cell - Lifelines Deep (Nature Genetics, 2018) 45 samples
  • CD16+ Neutrophils
  • CD16+ Neutrophils - European (Nature Communications, 2015) 101 samples
  • CD16+ Neutrophils - Mixed - BLUEPRINT (Cell, 2016) 192 samples
  • CD16+ Neutrophils - splicing QTL - Mixed - BLUEPRINT (Cell, 2016) 192 samples
  • Exposure Studies - Monocytes
  • Lipopolysaccharide (LPS) - 2hours - European (Science, 2014) 432 samples
  • Lipopolysaccharide (LPS) - 24hours - European (Science, 2014) 432 samples
  • IFN-gamma - European (Science, 2014) 432 samples
  • Lipopolysaccharide (LPS) - 90 minutes - European (Nature Communications, 2017) 134 samples
  • Lipopolysaccharide (LPS) - 6 hours - European (Nature Communications, 2017) 134 samples
  • Muramyl-dipeptide (MDP) - 90 minutes - European (Nature Communications, 2017) 134 samples
  • Muramyl-dipeptide (MDP) - 6 hours - European (Nature Communications, 2017) 134 samples
  • 5′-triphosphate RNA (RNA) - 90 minutes - European (Nature Communications, 2017) 134 samples
  • 5′-triphosphate RNA (RNA) - 6 hours - European (Nature Communications, 2017) 134 samples
  • Exposure Studies - Dendritic Cells
  • Lipopolysaccharide (LPS) - Mixed (Science, 2014) 356 samples
  • Lipopolysaccharide (LPS) - response QTLs - Mixed (Science, 2014) 356 samples
  • Influenza infection - Mixed (Science, 2014) 342 samples
  • Influenza infection - response QTLs - Mixed (Science, 2014) 342 samples
  • IFN-beta - Mixed (Science, 2014) 284 samples
  • IFN-beta - response QTLs - Mixed (Science, 2014) 284 samples
  • Lymphoblastoid Cell Lines
  • LCL - European (Nature, 2013) 373 samples
  • LCL - African (Nature, 2013) 89 samples
  • LCL - European - twins study (Nature Genetics, 2012) 856 samples
  • LCL - Utah residents with Northern/Western European ancestry (Nature, 2015) 99 samples
  • LCL - Han Chinese (Nature, 2015) 103 samples
  • LCL - Gujarati Indians (Nature, 2015) 103 samples
  • LCL - Japanese (Nature, 2015) 104 samples
  • LCL - Luhya in Kenya (Nature, 2015) 99 samples
  • LCL - Yoruba in Nigeria (Nature, 2015) 108 samples
  • LCL - Mixed (Nature Genetics, 2017) 506 samples
  • LCL - Mixed - ALSPAC (PLOS Genetics, 2014) 869 samples
  • LCL - alternative splicing QTL - European (PLOS Genetics, 2015) 204 samples
  • Epigenetics
  • methylation Quantitative Trait Locus (meQTL) - European (Nature Genetics, 2017) 3841 samples
  • expression Quantitative Trait Methylation (eQTM) - European (Nature Genetics, 2017) 2101 samples
  • Monocytes - meQTL - Mixed - BLUEPRINT (Cell, 2016) 196 samples
  • Monocytes - histone modification QTL (H3K4me1) - Mixed - BLUEPRINT (Cell, 2016) 172 samples
  • Monocytes - histone modification QTL (H3K27ac) - Mixed - BLUEPRINT (Cell, 2016) 162 samples
  • Neutrophils - meQTL - Mixed - BLUEPRINT (Cell, 2016) 197 samples
  • Neutrophils - histone modification QTL (H3K4me1) - Mixed - BLUEPRINT (Cell, 2016) 173 samples
  • Neutrophils - histone modification QTL (H3K27ac) - Mixed - BLUEPRINT (Cell, 2016) 174 samples
  • CD4+ T-cells - meQTL - Mixed - BLUEPRINT (Cell, 2016) 133 samples
  • CD4+ T-cells - histone modification QTL (H3K4me1) - Mixed - BLUEPRINT (Cell, 2016) 104 samples
  • CD4+ T-cells - histone modification QTL (H3K27ac) - Mixed - BLUEPRINT (Cell, 2016) 142 samples
  • LCL - meQTL - Yoruba (PLOS Genetics, 2014) 64 samples
  • LCL - hmQTL (H3K4me3, H3K4me1, H3K27ac) - Yoruba (Cell, 2015) 75 samples
  • Other
  • CD56dim CD16+ NK cell - Mixed (Cell, 2018) 91 samples
  • CD8+ T-cell - Mixed (Cell, 2018) 91 samples
  • Fibroblast - alternative splicing QTL - European (PLOS Genetics, 2015) 204 samples
  • Prostate - Mixed ethnicity - GTEx Consortium v8 (bioRxiv, 2019) 221 samples
  • CD8+ T-Cells - European - Estonian Biobank (PLOS Genetics, 2017) 313 samples
  • CD8+ T-Cells - European - single-cell - Lifelines Deep (Nature Genetics, 2018) 45 samples
  • NK Cells - European - single-cell - Lifelines Deep (Nature Genetics, 2018) 45 samples
  • PBMC - European - single-cell - Lifelines Deep (Nature Genetics, 2018) 45 samples
  • Dendritic Cells - European - single-cell - Lifelines Deep (Nature Genetics, 2018) 45 samples
  • Dendritic Cells - Mixed (Science, 2014) 528 samples
  • Monocyte-derived macrophages (MDMs) - Mixed - Systemic Sclerosis (Ann Rheum Dis, 2018) 57 samples
  • HIPC Studies
  • Influenza Vaccination
  • Mayo - ImmuneSpace SDY67
  • Timepoint: Day 0 150 samples
  • Timepoint: Day 3 150 samples
  • Timepoint: Day 28 150 samples
  • NIH - ImmuneSpace SDY80
  • Timepoint: Day -7 51 samples
  • Timepoint: Day 0 50 samples
  • Timepoint: Day 1 53 samples
  • Timepoint: Day 7 49 samples
  • Timepoint: Day 70 51 samples
  • Yale - ImmuneSpace SDY400, SDY404
  • Timepoint: Day 0 54 samples
  • Timepoint: Day 2 55 samples
  • Timepoint: Day 7 55 samples
  • Timepoint: Day 28 55 samples
  • Emory - ImmuneSpace SDY56
  • Timepoint: Day 0 55 samples
  • Timepoint: Day 1 53 samples
  • Timepoint: Day 3 53 samples
  • Timepoint: Day 7 51 samples
  • Timepoint: Day 14 53 samples
  • Chikungunya Infection
  • DHIPC - SDY1288 43 samples
  • Timepoint: Acute (Day 2-4) 41 samples
  • Timepoint: Convalescent (Day 14-17) 43 samples
  • Zika Infection
  • DHIPC : UC Berkeley    -     (HLA Genotyping ) 89 samples
  • Timepoint: Acute 84 samples
  • Timepoint: Late Acute 88 samples
  • Timepoint: Convalescent 87 samples
  • Transcription Factors
  • ENCODE ChIP-Seq Experiments
  • Transcription Factor Binding Sites 144 cell types, 736 targets

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